Immunoediting and Evasion
Background
The human immune system has a key role in controlling tumor growth. This century-old idea has been reinforced in recent years due to the success of immune-modulating cancer therapies. The immune reaction can be triggered by neoantigens, small peptides that are translated from mutated genes and are presented to immune cells at the cancer cell membrane. However, different genomic alterations can lead to evasion of this immune reaction and hence result in a lack of immunotherapy response. Better understanding of these alterations has the potential to provide new insights in tumor-immune interactions, which could be exploited to predict differential responses to immunotherapy, which is a key unresolved question.
What we do
We are using computational approaches to study neoantigens and immune selection signals in large, publicly available genomic and transcriptomic datasets and evaluate those signals as putative biomarkers for immunotherapy responses.
Who is involved
Arne
Claeys
External Postdoc
Dilara Ağacik
Master Student
Jimmy
Van den Eynden
Principal Investigator
Research output
Sep 30, 2024
MHC class II genotypes are independent predictors of anti-PD1 immunotherapy response in melanoma
Arne Claeys and Jimmy Van den Eynden
Dec 12, 2023
A computational exploration of MHC-based immune selection signals in large cancer genome sequencing datasets
Arne Claeys
May 9, 2023
Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data
Arne Claeys, Peter Merseburger, Jasper Staut, Kathleen Marchal and Jimmy Van den Eynden
Mar 15, 2023
Quantification of Neoantigen-Mediated Immunoediting in Cancer Evolution
Arne Claeys and Jimmy Van den Eynden
Oct 28, 2021
Pharmacologic RNA splicing modulation: a novel mechanism to enhance neoantigen-directed anti-tumor immunity and immunotherapy response
Kerryn Elliott, Jonas Nilsson and Jimmy Van den Eynden
Feb 8, 2021
Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals
Arne Claeys, Tom Luijts, Kathleen Marchal and Jimmy Van den Eynden
Nov 25, 2019
Lack of detectable neoantigen depletion signals in the untreated cancer genome
Jimmy Van den Eynden, Alejandro Jiménez-Sánchez, Martin L Miller and Erik Larsson