Immunoediting and Evasion

Background

The human immune system has a key role in controlling tumor growth. This century-old idea has been reinforced in recent years due to the success of immune-modulating cancer therapies. The immune reaction can be triggered by neoantigens, small peptides that are translated from mutated genes and are presented to immune cells at the cancer cell membrane. However, different genomic alterations can lead to evasion of this immune reaction and hence result in a lack of immunotherapy response. Better understanding of these alterations has the potential to provide new insights in tumor-immune interactions, which could be exploited to predict differential responses to immunotherapy, which is a key unresolved question.

What we do

We are using computational approaches to study neoantigens and immune selection signals in large, publicly available genomic and transcriptomic datasets and evaluate those signals as putative biomarkers for immunotherapy responses.

Who is involved

Arne
Claeys

Postdoc

Jimmy
Van den Eynden

Principal Investigator

Research output

Thesis

  Dec 12, 2023

A computational exploration of MHC-based immune selection signals in large cancer genome sequencing datasets

Arne Claeys

Article

  May 9, 2023

Benchmark of tools for in silico prediction of MHC class I and class II genotypes from NGS data

Arne Claeys, Peter Merseburger, Jasper Staut, Kathleen Marchal and Jimmy Van den Eynden

Letter

  Mar 15, 2023

Quantification of Neoantigen-Mediated Immunoediting in Cancer Evolution

Arne Claeys and Jimmy Van den Eynden

Poster

  Mar 31, 2022

GE Research meeting 2022

Arne Claeys

Research Highlight

  Oct 28, 2021

Pharmacologic RNA splicing modulation: a novel mechanism to enhance neoantigen-directed anti-tumor immunity and immunotherapy response

Kerryn Elliott, Jonas Nilsson and Jimmy Van den Eynden

Article

  Feb 8, 2021

Low immunogenicity of common cancer hot spot mutations resulting in false immunogenic selection signals

Arne Claeys, Tom Luijts, Kathleen Marchal and Jimmy Van den Eynden

Article

  Nov 25, 2019

Lack of detectable neoantigen depletion signals in the untreated cancer genome

Jimmy Van den Eynden, Alejandro Jiménez-Sánchez, Martin L Miller and Erik Larsson