Lavaert et al., 2020: Integrated scRNA-Seq Identifies Human Postnatal Thymus Seeding Progenitors and Regulatory Dynamics of Differentiating Immature Thymocytes
Cell information vs gene expression on reduced dimensions
In this tab, users can visualise both cell information and gene
expression side-by-side on low-dimensional representions.
Cell information / gene expression violin plot / box plot
In this tab, users can visualise the gene expression or continuous cell information
(e.g. Number of UMIs / module score) across groups of cells (e.g. libary / clusters).
Proportion / cell numbers across different cell information
In this tab, users can visualise the composition of single cells based on one discrete
cell information across another discrete cell information.
Usage examples include the library or cellcycle composition across clusters.
In this tab, users can visualise the gene expression patterns of
multiple genes grouped by categorical cell information (e.g. library / cluster).
The normalised expression are averaged, log-transformed and then plotted.